A journey-oriented NGS workbench for FASTQ QC, bulk RNA-seq, and single-cell RNA-seq. Focused skills establish the user's starting point, design toward a scientific outcome, bind that design to live Nextflow/nf-core or Snakemake capabilities, preserve checksum-bound native approval, and interpret completed results from file-backed evidence.
Runs locally: needs the ChatGPT desktop app or Codex with local execution enabled.
Install
- 1Add it in ChatGPT
Open Plugins in the ChatGPT sidebar (web or desktop), search for “NGS Analysis Workbench” and select +. You'll be asked to sign in to any connected service on first use. Then type @ in a chat to call it.
Skills 5
- Design NGS Analysis
Turn a scientific outcome into a defensible plan
- NGS Analysis Workbench
Route and continue an NGS analysis journey
- Run NGS Analysis
Plan, approve, run, monitor, and recover NGS work
- Understand NGS Data
Establish an evidence-backed NGS starting point
- Understand NGS Results
Connect NGS evidence to the scientific objective
Things to ask
- “run a FastQC and Salmon QC on a public RNA-seq dataset and provide an interpretation of the results.”
- “run a scRNA-seq analysis with STARsolo on a public dataset and provide an interpretation of the results.”
- “run a NGS analysis on my sequencing data in my project.”
Disconnect or uninstall
- 1In ChatGPT
Disconnect an account in Settings → Apps or Plugins. To remove the plugin itself, open NGS Analysis Workbench in the Plugin Directory and select Uninstall plugin. Uninstalling can disconnect every account connected through it, and plugins your workspace installs may not offer the option.
- 2In Codex
Run /plugins in the Codex CLI, select the plugin and uninstall it, or press Space to turn it off.